STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnfBElectron transport complex, RnfABCDGE type, B subunit protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (138 aa)    
Predicted Functional Partners:
GLE_3310
Hypothetical protein.
  
 0.979
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.806
GLE_5200
Indolepyruvate ferredoxin oxidoreductase.
    
 0.796
maeB
NADP-dependent malic enzyme.
     
 0.757
GLE_2226
UPF0125 protein; Belongs to the UPF0125 (RnfH) family.
 
   
 0.643
nuoE
NADH-quinone oxidoreductase, E subunit family protein.
 
  
 0.641
GLE_0677
Dihydrolipoyl dehydrogenase.
  
  
  0.629
sspB
Stringent starvation protein B.
  
     0.607
GLE_3067
Oxidoreductase.
    
 0.585
GLE_4392
Oxidoreductase.
    
 0.585
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.