STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3320Hypothetical protein. (124 aa)    
Predicted Functional Partners:
GLE_3322
Hypothetical protein.
 
  
 0.952
GLE_3321
UPF0276 protein; Belongs to the UPF0276 family.
 
  
 0.938
GLE_2968
Hypothetical protein.
 
  
 0.798
GLE_2967
AP endonuclease, family 2; Belongs to the UPF0276 family.
 
  
 0.720
GLE_2965
DoxX.
 
  
 0.524
rnt
Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
       0.451
rpoE-2
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.436
GLE_3324
Hypothetical protein.
       0.422
GLE_5332
Tetratricopeptide repeat domain protein.
  
     0.410
GLE_1102
Hypothetical protein.
  
     0.409
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.