Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acyIIPenicillin acylase II. (805 aa)    
Predicted Functional Partners:
bla-2
Beta-lactamase.
     
  0.872
GLE_3354
Hypothetical protein.
       0.509
GLE_3584
Oar protein.
  
     0.490
cbh
Choloylglycine hydrolase.
     
  0.447
GLE_4937
Dipeptidyl peptidase IV/S9A/B/C peptidase domain protein.
  
     0.440
GLE_2269
TonB-dependent outer membrane receptor.
  
     0.439
GLE_4729
Hypothetical protein.
  
     0.429
GLE_4894
Amino acid adenylation domain protein.
  
  
 0.423
dacC
Penicillin-binding protein 6 precursor; Belongs to the peptidase S11 family.
     
  0.409
GLE_2272
TonB-dependent outer membrane receptor.
  
     0.406
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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