Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3370Peptidase, M56 family. (776 aa)    
Predicted Functional Partners:
GLE_3371
Penicillinase repressor family protein.
 
  
  0.936
GLE_0951
Transcriptional regulator, BlaI/MecI/CopY family.
  
  
  0.828
GLE_3372
Hypothetical protein.
       0.773
GLE_0026
Hypothetical protein.
   
 0.726
GLE_3908
Histone deacetylase family.
    
 0.715
GLE_1749
Peptidase, families S8 and S53.
    
 0.711
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.709
GLE_0865
Serine/threonine protein kinase protein family.
    
 0.681
GLE_0084
Hypothetical protein.
  
 
  0.652
GLE_4318
SH3 domain protein.
  
 
  0.645
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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