Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3371Penicillinase repressor family protein. (128 aa)    
Predicted Functional Partners:
GLE_3370
Peptidase, M56 family.
 
  
  0.936
GLE_3372
Hypothetical protein.
       0.773
GLE_0837
Transcriptional regulator.
  
     0.662
GLE_2297
Hypothetical protein.
  
     0.637
GLE_0951
Transcriptional regulator, BlaI/MecI/CopY family.
     
 0.578
GLE_3373
Cation diffusion facilitator family transporter.
       0.571
GLE_4987
Phosphate-selective porin O and P.
  
     0.567
GLE_5000
Hypothetical protein.
  
     0.539
GLE_2760
Peptidase, M56 family/ankyrin repeat.
  
 
 0.532
GLE_2759
Penicillinase repressor.
     
 0.522
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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