Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GLE_3411TonB family C-terminal domain. (227 aa)    
Predicted Functional Partners:
exbB-2
Transporter, MotA/TolQ/ExbB proton channel family.
 
 
 0.857
GLE_5328
Biopolymer transport exbD2 protein, putative.
  
 
 0.769
GLE_2417
TonB-dependent siderophore receptor.
   
 
 0.747
GLE_3678
TonB-dependent siderophore receptor.
   
 
 0.747
GLE_5404
TonB-dependent siderophore receptor.
   
 
 0.747
GLE_5329
Transport energizing protein, ExbD/TolR family.
  
 
 0.695
GLE_2330
Transport energizing protein, ExbD/TolR family.
  
 
 0.681
GLE_3035
Transporter, MotA/TolQ/ExbB proton channel family.
  
 
 0.662
GLE_3034
Transport energizing protein, ExbD/TolR family.
   
 
 0.611
GLE_4092
TonB-dependent receptor.
  
 
   0.594
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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