STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3494ATPase, AAA family protein; Belongs to the AAA ATPase family. (456 aa)    
Predicted Functional Partners:
GLE_1664
Hypothetical protein.
  
 
 
 0.887
GLE_3496
Tetratricopeptide repeat domain protein.
 
     0.883
GLE_4213
ABC transporter, ATP-binding protein.
 
 
  0.824
GLE_3908
Histone deacetylase family.
   
 0.811
GLE_3495
Hypothetical protein.
       0.800
GLE_0149
ABC transporter, ATP-binding protein.
  
 
   0.744
GLE_5025
ABC transporter, ATP-binding protein.
  
 
   0.738
GLE_2517
ABC transporter, ATP-binding protein.
 
 
  0.733
GLE_2539
ABC transporter, ATP-binding protein.
 
 
  0.728
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 0.728
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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