GLE_3571 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLE_3571

ABC transporter, ATP-binding protein/transmembrane region. (620 aa)

Predicted Functional Partners:

GLE_3572

0.761

GLE_4213

0.640

msbA

0.577

GLE_1735

0.572

GLE_0879

0.562

GLE_2539

0.531

GLE_2517

0.530

epsB

0.518

GLE_3157

0.518

GLE_3073

0.482

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_0879	GLE_3571	GLE_0879	GLE_3571	ABC transporter.	ABC transporter, ATP-binding protein/transmembrane region.	0.562
GLE_1735	GLE_3571	GLE_1735	GLE_3571	ABC transporter, permease/ATP-binding protein.	ABC transporter, ATP-binding protein/transmembrane region.	0.572
GLE_1735	GLE_4213	GLE_1735	GLE_4213	ABC transporter, permease/ATP-binding protein.	ABC transporter, ATP-binding protein.	0.442
GLE_1735	msbA	GLE_1735	GLE_3033	ABC transporter, permease/ATP-binding protein.	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.571
GLE_2517	GLE_3571	GLE_2517	GLE_3571	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein/transmembrane region.	0.530
GLE_2517	GLE_4213	GLE_2517	GLE_4213	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.546
GLE_2517	msbA	GLE_2517	GLE_3033	ABC transporter, ATP-binding protein.	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.517
GLE_2539	GLE_3571	GLE_2539	GLE_3571	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein/transmembrane region.	0.531
GLE_2539	GLE_4213	GLE_2539	GLE_4213	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.523
GLE_2539	msbA	GLE_2539	GLE_3033	ABC transporter, ATP-binding protein.	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.518
GLE_3073	GLE_3571	GLE_3073	GLE_3571	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein/transmembrane region.	0.482
GLE_3157	GLE_3571	GLE_3157	GLE_3571	Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	ABC transporter, ATP-binding protein/transmembrane region.	0.518
GLE_3571	GLE_0879	GLE_3571	GLE_0879	ABC transporter, ATP-binding protein/transmembrane region.	ABC transporter.	0.562
GLE_3571	GLE_1735	GLE_3571	GLE_1735	ABC transporter, ATP-binding protein/transmembrane region.	ABC transporter, permease/ATP-binding protein.	0.572
GLE_3571	GLE_2517	GLE_3571	GLE_2517	ABC transporter, ATP-binding protein/transmembrane region.	ABC transporter, ATP-binding protein.	0.530
GLE_3571	GLE_2539	GLE_3571	GLE_2539	ABC transporter, ATP-binding protein/transmembrane region.	ABC transporter, ATP-binding protein.	0.531
GLE_3571	GLE_3073	GLE_3571	GLE_3073	ABC transporter, ATP-binding protein/transmembrane region.	ABC transporter, ATP-binding protein.	0.482
GLE_3571	GLE_3157	GLE_3571	GLE_3157	ABC transporter, ATP-binding protein/transmembrane region.	Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	0.518
GLE_3571	GLE_3572	GLE_3571	GLE_3572	ABC transporter, ATP-binding protein/transmembrane region.	Hypothetical protein.	0.761
GLE_3571	GLE_4213	GLE_3571	GLE_4213	ABC transporter, ATP-binding protein/transmembrane region.	ABC transporter, ATP-binding protein.	0.640