Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3580Type IV pre-pilin like leader sequence. (176 aa)    
Predicted Functional Partners:
pilV
Type IV pilus assembly protein.
 
  
 0.959
pilW
Type IV pilus assembly protein.
 
  
 0.958
pilY1
Type IV pilus assembly protein.
 
  
 0.944
pilX
Type IV pilus assembly protein.
 
  
 0.930
pilE
Type IV pilus assembly protein.
 
  
  0.889
pilV-2
Type IV pilus assembly protein.
 
  
 0.836
pilY1-2
Type IV pilus assembly protein.
 
  
 0.825
pilN
Type IV pilus assembly protein.
 
  
 0.801
pilP
Type IV assembly protein.
  
  
 0.800
pilO
Type IV assembly protein.
 
   
 0.798
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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