STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilE-2Type IV pilus assembly protein. (152 aa)    
Predicted Functional Partners:
GLE_3626
Type IV pre-pilin like leader sequence.
 
  
  0.913
pilV-2
Type IV pilus assembly protein.
 
  
 0.892
pilY1-2
Type IV pilus assembly protein.
 
     0.857
pilW-2
Type IV pilus assembly protein.
 
     0.853
GLE_4177
General secretion pathway protein J.
  
 0.846
pilC
Type IV pilus assembly protein.
 
  
 0.802
GLE_3580
Type IV pre-pilin like leader sequence.
 
  
  0.780
pilB
Type IV pilus assembly protein.
 
 0.765
gspK
General secretion pathway protein K.
  
 
 0.760
pilN
Type IV pilus assembly protein.
 
  
 0.755
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.