Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3664Pass1-related protein. (336 aa)    
Predicted Functional Partners:
GLE_3665
SapC.
 
     0.952
GLE_3666
TonB-dependent outer membrane receptor.
 
     0.882
glk-2
Glucokinase; Belongs to the bacterial glucokinase family.
 
     0.801
GLE_3663
Cellulase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.773
GLE_5160
TonB-dependent receptor.
  
     0.769
GLE_5129
Glycosyl hydrolase, family 3.
  
     0.728
GLE_0343
Transcriptional regulator, LacI family.
  
     0.649
GLE_2765
TonB-dependent receptor.
  
     0.600
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
   0.597
GLE_2766
Transporter, major facilitator family.
  
     0.594
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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