GLE_3673 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GLE_3673

ABC transporter, ATP-binding protein. (579 aa)

Predicted Functional Partners:

GLE_4213

0.793

GLE_5357

0.673

GLE_3494

0.584

GLE_3672

0.572

lpxK

0.545

msbA

0.525

GLE_5023

0.518

GLE_1735

0.517

GLE_5024

0.515

cysN

0.511

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_1735	GLE_3494	GLE_1735	GLE_3494	ABC transporter, permease/ATP-binding protein.	ATPase, AAA family protein; Belongs to the AAA ATPase family.	0.570
GLE_1735	GLE_3673	GLE_1735	GLE_3673	ABC transporter, permease/ATP-binding protein.	ABC transporter, ATP-binding protein.	0.517
GLE_1735	GLE_4213	GLE_1735	GLE_4213	ABC transporter, permease/ATP-binding protein.	ABC transporter, ATP-binding protein.	0.442
GLE_1735	GLE_5357	GLE_1735	GLE_5357	ABC transporter, permease/ATP-binding protein.	ABC transporter, ATP-binding protein.	0.836
GLE_1735	lpxK	GLE_1735	GLE_3032	ABC transporter, permease/ATP-binding protein.	Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).	0.691
GLE_1735	msbA	GLE_1735	GLE_3033	ABC transporter, permease/ATP-binding protein.	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.513
GLE_3494	GLE_1735	GLE_3494	GLE_1735	ATPase, AAA family protein; Belongs to the AAA ATPase family.	ABC transporter, permease/ATP-binding protein.	0.570
GLE_3494	GLE_3673	GLE_3494	GLE_3673	ATPase, AAA family protein; Belongs to the AAA ATPase family.	ABC transporter, ATP-binding protein.	0.584
GLE_3494	GLE_4213	GLE_3494	GLE_4213	ATPase, AAA family protein; Belongs to the AAA ATPase family.	ABC transporter, ATP-binding protein.	0.813
GLE_3494	msbA	GLE_3494	GLE_3033	ATPase, AAA family protein; Belongs to the AAA ATPase family.	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.569
GLE_3672	GLE_3673	GLE_3672	GLE_3673	Hypothetical protein.	ABC transporter, ATP-binding protein.	0.572
GLE_3673	GLE_1735	GLE_3673	GLE_1735	ABC transporter, ATP-binding protein.	ABC transporter, permease/ATP-binding protein.	0.517
GLE_3673	GLE_3494	GLE_3673	GLE_3494	ABC transporter, ATP-binding protein.	ATPase, AAA family protein; Belongs to the AAA ATPase family.	0.584
GLE_3673	GLE_3672	GLE_3673	GLE_3672	ABC transporter, ATP-binding protein.	Hypothetical protein.	0.572
GLE_3673	GLE_4213	GLE_3673	GLE_4213	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.793
GLE_3673	GLE_5023	GLE_3673	GLE_5023	ABC transporter, ATP-binding protein.	Membrane protein.	0.518
GLE_3673	GLE_5024	GLE_3673	GLE_5024	ABC transporter, ATP-binding protein.	Membrane protein.	0.515
GLE_3673	GLE_5357	GLE_3673	GLE_5357	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.673
GLE_3673	cysN	GLE_3673	GLE_1238	ABC transporter, ATP-binding protein.	Bifunctional enzyme CysN/cysC; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.511
GLE_3673	lpxK	GLE_3673	GLE_3032	ABC transporter, ATP-binding protein.	Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).	0.545