Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GLE_3674Taurine catabolism dioxygenase TauD/TfdA. (323 aa)    
Predicted Functional Partners:
lgrB
Linear gramicidin synthetase subunit B.
 
    0.893
GLE_2557
Amino acid adenylation domain protein.
  
 0.881
GLE_0544
Linear gramicidin synthetase subunit C.
 
    0.879
GLE_2560
Amino acid adenylation domain protein.
  
 0.861
GLE_3997
Linear gramicidin synthetase subunit D.
 
     0.848
GLE_2958
Linear gramicidin synthetase subunit C.
 
    0.817
GLE_2558
Amino acid adenylation domain protein.
 
    0.802
GLE_0546
Linear gramicidin synthetase subunit D.
 
    0.798
GLE_1851
AMP-binding enzyme.
 
    0.765
GLE_2959
Linear gramicidin synthetase subunit D.
 
    0.746
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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