Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
GLE_3858GntR family transcriptional regulator. (518 aa)    
Predicted Functional Partners:
gltB
Glutamine amidotransferases class-II/glutamate synthase.
     
  0.886
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.615
pheA
Chorismate mutase/prephenate dehydratase/ACT domain.
    
 0.581
GLE_3859
Hypothetical protein.
       0.572
GLE_0677
Dihydrolipoyl dehydrogenase.
     
  0.508
GLE_4894
Amino acid adenylation domain protein.
   
 
 0.495
GLE_2560
Amino acid adenylation domain protein.
   
 
  0.488
GLE_3860
Transcriptional regulator, AraC family.
       0.464
GLE_4824
Aminotransferase, classes I and II superfamily.
  
  
 
0.445
GLE_4686
GntR family transcriptional regulator.
  
  
 
0.437
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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