Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3878ABC-2 type transporter. (261 aa)    
Predicted Functional Partners:
GLE_3877
ABC transporter, ATP-binding protein.
 
 0.999
GLE_4246
ABC-2 type transporter.
     
  0.872
GLE_3879
Glycosyl transferase, family 2.
  
    0.732
GLE_4245
ABC transporter, ATP-binding protein.
    
  0.720
GLE_1851
AMP-binding enzyme.
  
     0.714
GLE_2261
Polysaccharide biosynthesis/export protein.
  
  
 0.627
GLE_2457
Polysaccharide biosynthesis/export protein.
  
  
 0.627
GLE_3876
Glycosyl transferase.
  
  
 0.596
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.549
GLE_3875
Hypothetical protein.
       0.543
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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