STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3908Histone deacetylase family. (279 aa)    
Predicted Functional Partners:
GLE_1262
Nuclear protein SET.
  
 0.941
GLE_2262
Hsp90xo protein.
    
 0.901
prk
Phosphoribulokinase.
    
  0.839
GLE_0881
ATP-dependent protease.
   
 0.811
GLE_3494
ATPase, AAA family protein; Belongs to the AAA ATPase family.
   
 0.811
GLE_5175
ATPase family associated with various cellular activities (AAA).
   
 0.811
GLE_3103
Hypothetical protein.
    
 0.777
GLE_4318
SH3 domain protein.
    
 0.777
GLE_5422
Hypothetical protein.
    
 0.777
GLE_3907
ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.751
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.