STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilKGlutamate methyltransferase. (774 aa)    
Predicted Functional Partners:
pilL
Hpt domain protein; Response regulator receiver domain/histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CheW-like domain.
  
 0.997
GLE_2449
Histidine kinase.
  
 0.982
pilJ
Type IV pilus assembly protein.
  
 0.959
GLE_3952
Signal transduction histidine kinase.
  
 0.935
GLE_3438
Diguanylate cyclase.
  
 0.901
GLE_3949
Hypothetical protein.
  
 0.900
GLE_0632
Sensory box histidine kinase.
  
 0.892
GLE_3948
Signal transduction histidine kinase.
  
 0.887
GLE_2451
cheR-type methyltransferase.
  
 
 0.884
pilI
Type IV pilus assembly protein.
  
 
 0.867
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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