STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilH-2Type IV pilus assembly protein. (121 aa)    
Predicted Functional Partners:
pilI
Type IV pilus assembly protein.
 
 
  0.995
pilJ
Type IV pilus assembly protein.
 
 0.993
pilL
Hpt domain protein; Response regulator receiver domain/histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CheW-like domain.
 
0.966
GLE_0632
Sensory box histidine kinase.
 
 0.956
GLE_1142
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.922
GLE_1143
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.922
pilH
Type IV pilus assembly protein.
  
  
 
0.908
GLE_5310
Sensory box histidine kinase.
 
 
 0.867
pilS
Type IV pilus sensor protein.
  
 0.854
GLE_4890
Sensor kinase RpeA.
  
  0.852
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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