GLE_3971 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GLE_3971

Tetratricopeptide repeat domain protein. (209 aa)

Predicted Functional Partners:

dinG

0.842

mrcB

0.842

GLE_3969

0.753

ribB

0.594

GLE_3968

0.581

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_3968	GLE_3969	GLE_3968	GLE_3969	Glycoprotease family.	Glyoxalase/bleomycin resistance protein/dioxygenase.	0.536
GLE_3968	GLE_3971	GLE_3968	GLE_3971	Glycoprotease family.	Tetratricopeptide repeat domain protein.	0.581
GLE_3968	dinG	GLE_3968	GLE_3970	Glycoprotease family.	ATP-dependent helicase.	0.644
GLE_3968	mrcB	GLE_3968	GLE_3972	Glycoprotease family.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.665
GLE_3969	GLE_3968	GLE_3969	GLE_3968	Glyoxalase/bleomycin resistance protein/dioxygenase.	Glycoprotease family.	0.536
GLE_3969	GLE_3971	GLE_3969	GLE_3971	Glyoxalase/bleomycin resistance protein/dioxygenase.	Tetratricopeptide repeat domain protein.	0.753
GLE_3969	dinG	GLE_3969	GLE_3970	Glyoxalase/bleomycin resistance protein/dioxygenase.	ATP-dependent helicase.	0.753
GLE_3969	mrcB	GLE_3969	GLE_3972	Glyoxalase/bleomycin resistance protein/dioxygenase.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.700
GLE_3971	GLE_3968	GLE_3971	GLE_3968	Tetratricopeptide repeat domain protein.	Glycoprotease family.	0.581
GLE_3971	GLE_3969	GLE_3971	GLE_3969	Tetratricopeptide repeat domain protein.	Glyoxalase/bleomycin resistance protein/dioxygenase.	0.753
GLE_3971	dinG	GLE_3971	GLE_3970	Tetratricopeptide repeat domain protein.	ATP-dependent helicase.	0.842
GLE_3971	mrcB	GLE_3971	GLE_3972	Tetratricopeptide repeat domain protein.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.842
GLE_3971	ribB	GLE_3971	GLE_4152	Tetratricopeptide repeat domain protein.	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.594
dinG	GLE_3968	GLE_3970	GLE_3968	ATP-dependent helicase.	Glycoprotease family.	0.644
dinG	GLE_3969	GLE_3970	GLE_3969	ATP-dependent helicase.	Glyoxalase/bleomycin resistance protein/dioxygenase.	0.753
dinG	GLE_3971	GLE_3970	GLE_3971	ATP-dependent helicase.	Tetratricopeptide repeat domain protein.	0.842
dinG	mrcB	GLE_3970	GLE_3972	ATP-dependent helicase.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.842
mrcB	GLE_3968	GLE_3972	GLE_3968	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Glycoprotease family.	0.665
mrcB	GLE_3969	GLE_3972	GLE_3969	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Glyoxalase/bleomycin resistance protein/dioxygenase.	0.700
mrcB	GLE_3971	GLE_3972	GLE_3971	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Tetratricopeptide repeat domain protein.	0.842