STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3990Lipoprotein. (500 aa)    
Predicted Functional Partners:
GLE_0248
Sporulation and cell division repeat protein.
    
   0.775
GLE_3988
POTRA domain, ShlB-type.
  
     0.768
GLE_0522
Hypothetical protein.
  
     0.726
pilL
Hpt domain protein; Response regulator receiver domain/histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CheW-like domain.
   
   0.700
arcA
Arginine deiminase.
   
   0.697
GLE_1978
Hypothetical protein.
   
   0.697
GLE_1272
Hypothetical protein.
  
     0.623
GLE_4651
Transglycosylase SLT domain.
  
     0.565
GLE_3061
Surface antigen family protein.
  
     0.496
GLE_0481
Membrane protein.
  
     0.478
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.