STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3997Linear gramicidin synthetase subunit D. (1908 aa)    
Predicted Functional Partners:
GLE_2621
Condensation domain protein.
 
     0.976
GLE_1851
AMP-binding enzyme.
 
    
0.918
GLE_2433
Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
      0.885
GLE_3674
Taurine catabolism dioxygenase TauD/TfdA.
 
     0.849
GLE_2556
Taurine catabolism dioxygenase TauD/TfdA.
 
     0.844
lgrE
Linear gramicidin dehydrogenase LgrE.
 
     0.756
GLE_2555
Thioesterase domain.
 
     0.754
GLE_2497
mbtH family protein.
  
     0.749
GLE_3677
MbtH family protein.
  
     0.746
GLE_2495
Beta-ketoacyl synthase/short chain dehydrogenase/methyltransferase domain.
 
     0.745
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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