STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4033Signal transduction protein. (420 aa)    
Predicted Functional Partners:
GLE_4032
Sensory box-containing diguanylate cyclase/cyclic diguanylate phosphodiesterase.
   
 
 0.969
GLE_5310
Sensory box histidine kinase.
 
 
 
 0.899
GLE_2223
Sensory box histidine kinase.
 
 
 
 0.897
GLE_0012
Diguanylate cyclase.
   
 
 0.870
kdpD
Two-component system sensor kinase KdpD.
    
 
 0.843
pilS
Type IV pilus sensor protein.
    
 
 0.843
GLE_4281
Sensor histidine kinase.
    
 
 0.843
GLE_4753
Sensor histidine kinase.
    
 
 0.843
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
     
 0.404
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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