STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4145Inner membrane protein YbcI. (197 aa)    
Predicted Functional Partners:
GLE_4146
D-lactate dehydrogenase.
       0.800
GLE_4143
Lipoprotein, LppC family.
 
     0.563
GLE_4144
Hypothetical protein; Belongs to the UPF0102 family.
       0.551
GLE_3457
Peptidoglycan-binding LysM.
  
     0.501
GLE_0976
Hypothetical protein.
  
     0.468
GLE_3371
Penicillinase repressor family protein.
  
     0.462
GLE_5001
Hypothetical protein.
  
     0.454
GLE_5515
Phage methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
   
    0.445
GLE_4847
Tetratricopeptide repeat domain protein.
  
     0.443
GLE_5002
Integral membrane protein.
  
     0.401
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.