STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspDGeneral secretion pathway protein D. (753 aa)    
Predicted Functional Partners:
gspK
General secretion pathway protein K.
 
   
 0.955
GLE_4177
General secretion pathway protein J.
 
  
 0.952
epaR
Type III secretion apparatus protein.
  
 
 0.949
sctJ
Type III secretion apparatus lipoprotein.
  
 
 0.948
GLE_5121
Type III secretion family protein.
  
 
 0.948
gspL
Fimbrial assembly protein.
 
  
 0.945
gspH
General secretion pathway protein H.
 
   
 0.938
GLE_4178
General secretion pathway protein I.
 
  
 0.937
GLE_4173
General secretion pathway protein N.
    
 0.927
epaP
Type III secretion apparatus protein.
  
 
 0.925
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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