Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspDGeneral secretion pathway protein D. (753 aa)    
Predicted Functional Partners:
sctJ
Type III secretion apparatus lipoprotein.
  
 
 0.977
epaR
Type III secretion apparatus protein.
  
 
 0.976
GLE_5121
Type III secretion family protein.
  
 
 0.970
gspK
General secretion pathway protein K.
 
   
 0.956
GLE_4178
General secretion pathway protein I.
 
 
 0.956
GLE_4177
General secretion pathway protein J.
 
  
 0.954
gspG
General secretion pathway protein G.
 
 
 0.949
gspH
General secretion pathway protein H.
 
   
 0.945
gspL
Fimbrial assembly protein.
 
  
 0.942
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.935
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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