Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4173General secretion pathway protein N. (258 aa)    
Predicted Functional Partners:
GLE_4174
General secretion pathway protein M.
     
 0.911
gspD
General secretion pathway protein D.
    
 0.899
GLE_4178
General secretion pathway protein I.
     
 0.880
gspK
General secretion pathway protein K.
     
 0.859
GLE_4177
General secretion pathway protein J.
     
 0.833
gspH
General secretion pathway protein H.
       0.825
gspL
Fimbrial assembly protein.
     
 0.817
gspG
General secretion pathway protein G.
     
 0.688
gspF
General secretion pathway protein F.
     
 0.579
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
     
 0.510
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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