Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspHGeneral secretion pathway protein H. (178 aa)    
Predicted Functional Partners:
gspK
General secretion pathway protein K.
 
   
 0.974
gspL
Fimbrial assembly protein.
 
   
 0.967
GLE_4177
General secretion pathway protein J.
 
   
 0.967
GLE_4178
General secretion pathway protein I.
 
  
 0.964
gspD
General secretion pathway protein D.
 
   
 0.945
gspG
General secretion pathway protein G.
 
  
 0.897
pilW
Type IV pilus assembly protein.
 
  
 0.850
GLE_4174
General secretion pathway protein M.
       0.826
GLE_4173
General secretion pathway protein N.
       0.825
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.796
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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