Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspEGeneral secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (588 aa)    
Predicted Functional Partners:
gspF
General secretion pathway protein F.
 
 0.996
pilC
Type IV pilus assembly protein.
 
 0.978
gspG
General secretion pathway protein G.
 
 0.958
gspD
General secretion pathway protein D.
 
 
 0.935
pilD
Type IV prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.880
gspL
Fimbrial assembly protein.
 
 
 
 0.878
pilB
Type IV pilus assembly protein.
  
  
 
0.876
GLE_4178
General secretion pathway protein I.
 
 0.852
gspK
General secretion pathway protein K.
 
  
 0.817
pilZ-2
Type IV pilus assembly protein PilZ.
    
 
 0.816
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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