Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4208Efflux transporter, RND family, MFP subunit. (418 aa)    
Predicted Functional Partners:
GLE_4210
Efflux ABC transporter, permease protein.
 
  
 0.957
GLE_4209
ABC transporter, ATP-binding protein.
 
    0.882
GLE_4207
Sensory box histidine kinase.
 
     0.866
algB
Alginate biosynthesis transcriptional regulatory protein AlgB.
 
     0.598
GLE_3080
Transcriptional regulator, LytR/AlgR family.
  
     0.534
GLE_2118
Hypothetical protein.
  
     0.520
GLE_2759
Penicillinase repressor.
  
     0.512
GLE_0551
Esterase.
  
     0.493
GLE_0807
Protein TolC.
  
  0.491
GLE_5445
RNA polymerase sigma factor, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.484
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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