STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4208Efflux transporter, RND family, MFP subunit. (418 aa)    
Predicted Functional Partners:
GLE_4210
Efflux ABC transporter, permease protein.
 
  
 0.955
GLE_4209
ABC transporter, ATP-binding protein.
 
   0.911
GLE_4207
Sensory box histidine kinase.
 
     0.865
algB
Alginate biosynthesis transcriptional regulatory protein AlgB.
 
     0.598
GLE_0807
Protein TolC.
  
  0.592
GLE_0735
Transmembrane protein.
   
  0.538
GLE_2568
Outer membrane efflux protein.
   
  0.538
GLE_3263
Metal ion efflux RND protein family.
   
  0.538
GLE_4558
Outer membrane efflux protein.
   
  0.538
GLE_4688
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
   
  0.538
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.