GLE_4209 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLE_4209

ABC transporter, ATP-binding protein. (252 aa)

Predicted Functional Partners:

GLE_3931

0.988

GLE_5219

0.988

GLE_4210

0.973

GLE_0807

0.911

GLE_4208

0.911

GLE_0697

0.854

GLE_0698

0.836

GLE_4984

0.833

GLE_4465

0.708

GLE_3933

0.706

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GLE_0697	GLE_0698	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.949
GLE_0697	GLE_3931	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.445
GLE_0697	GLE_3933	Efflux ABC transporter, permease protein.	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.762
GLE_0697	GLE_4209	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.854
GLE_0697	GLE_4210	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.436
GLE_0697	GLE_4465	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.719
GLE_0697	GLE_5219	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.445
GLE_0698	GLE_0697	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.949
GLE_0698	GLE_3931	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.447
GLE_0698	GLE_3933	Efflux ABC transporter, permease protein.	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.713
GLE_0698	GLE_4209	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.836
GLE_0698	GLE_4210	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.711
GLE_0698	GLE_4465	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.735
GLE_0698	GLE_5219	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.444
GLE_0807	GLE_3931	Protein TolC.	Efflux ABC transporter, permease protein.	0.444
GLE_0807	GLE_3933	Protein TolC.	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.684
GLE_0807	GLE_4208	Protein TolC.	Efflux transporter, RND family, MFP subunit.	0.592
GLE_0807	GLE_4209	Protein TolC.	ABC transporter, ATP-binding protein.	0.911
GLE_0807	GLE_4210	Protein TolC.	Efflux ABC transporter, permease protein.	0.428
GLE_3931	GLE_0697	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.445