Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GLE_4245ABC transporter, ATP-binding protein. (418 aa)    
Predicted Functional Partners:
GLE_4246
ABC-2 type transporter.
 
  
 0.994
GLE_4244
Methyltransferase type 11.
 
   
 0.940
GLE_4243
NAD dependent epimerase/dehydratase family protein.
   
 0.923
GLE_3877
ABC transporter, ATP-binding protein.
  
  
 
0.906
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
   
 0.887
GLE_4247
Glycosyl transferase, group 1 family protein.
 
   
 0.859
mdeA
Methionine gamma-lyase.
     
 0.792
GLE_3878
ABC-2 type transporter.
    
  0.720
GLE_4241
Glycosyl transferase, group 1 family protein.
 
     0.686
GLE_4240
Methyltransferase domain family.
 
     0.620
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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