Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4254Outer membrane protein. (125 aa)    
Predicted Functional Partners:
GLE_4253
Outer membrane protein.
 
   0.918
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
 
 0.788
GLE_4974
Hypothetical protein.
    
 
 0.788
GLE_2733
Ferritin-like domain.
  
    0.601
pilU-2
Type IV pilus assembly protein.
       0.570
GLE_0303
Hypothetical protein.
    
   0.447
GLE_0614
TonB family C-terminal domain.
    
   0.447
GLE_0952
Peptidase, M56 family/TonB family C-terminal domain protein.
    
   0.447
GLE_2234
Gram-negative bacterial tonB protein.
    
   0.447
GLE_2331
TonB family C-terminal domain.
    
   0.447
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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