STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilU-2Type IV pilus assembly protein. (371 aa)    
Predicted Functional Partners:
pilC
Type IV pilus assembly protein.
  
   
 0.876
pilM
Type IV pilus assembly protein.
  
  
 0.828
pilD
Type IV prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.821
gspF
General secretion pathway protein F.
  
   
 0.802
pilQ
Type IV assembly protein.
  
  
 0.692
pilN
Type IV pilus assembly protein.
  
  
 0.656
pilO
Type IV assembly protein.
  
  
 0.641
pilP
Type IV assembly protein.
  
   
 0.603
GLE_4253
Outer membrane protein.
       0.592
GLE_4254
Outer membrane protein.
       0.570
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.