GLE_4278 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLE_4278

Hypothetical protein. (1381 aa)

Predicted Functional Partners:

GLE_4277

0.951

GLE_4279

0.951

GLE_4280

0.951

scpA

0.870

GLE_0632

0.656

GLE_3908

0.593

GLE_3438

0.589

guaB

0.586

GLE_1142

0.580

GLE_1143

0.580

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_0632	GLE_1142	GLE_0632	GLE_1142	Sensory box histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.999
GLE_0632	GLE_1143	GLE_0632	GLE_1143	Sensory box histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.999
GLE_0632	GLE_3438	GLE_0632	GLE_3438	Sensory box histidine kinase.	Diguanylate cyclase.	0.990
GLE_0632	GLE_4278	GLE_0632	GLE_4278	Sensory box histidine kinase.	Hypothetical protein.	0.656
GLE_0632	guaB	GLE_0632	GLE_2894	Sensory box histidine kinase.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.845
GLE_1142	GLE_0632	GLE_1142	GLE_0632	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Sensory box histidine kinase.	0.999
GLE_1142	GLE_1143	GLE_1142	GLE_1143	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.999
GLE_1142	GLE_3438	GLE_1142	GLE_3438	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Diguanylate cyclase.	0.986
GLE_1142	GLE_4278	GLE_1142	GLE_4278	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Hypothetical protein.	0.580
GLE_1142	guaB	GLE_1142	GLE_2894	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.633
GLE_1143	GLE_0632	GLE_1143	GLE_0632	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Sensory box histidine kinase.	0.999
GLE_1143	GLE_1142	GLE_1143	GLE_1142	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.999
GLE_1143	GLE_3438	GLE_1143	GLE_3438	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Diguanylate cyclase.	0.985
GLE_1143	GLE_4278	GLE_1143	GLE_4278	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Hypothetical protein.	0.580
GLE_1143	guaB	GLE_1143	GLE_2894	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.633
GLE_3438	GLE_0632	GLE_3438	GLE_0632	Diguanylate cyclase.	Sensory box histidine kinase.	0.990
GLE_3438	GLE_1142	GLE_3438	GLE_1142	Diguanylate cyclase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.986
GLE_3438	GLE_1143	GLE_3438	GLE_1143	Diguanylate cyclase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.985
GLE_3438	GLE_4278	GLE_3438	GLE_4278	Diguanylate cyclase.	Hypothetical protein.	0.589
GLE_3438	guaB	GLE_3438	GLE_2894	Diguanylate cyclase.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.700