Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GLE_4533 | GLE_4535 | GLE_4533 | GLE_4535 | Hypothetical protein. | Hypothetical protein. | 0.773 |
GLE_4533 | GLE_4536 | GLE_4533 | GLE_4536 | Hypothetical protein. | Hypothetical protein. | 0.532 |
GLE_4533 | GLE_4537 | GLE_4533 | GLE_4537 | Hypothetical protein. | Prolyl oligopeptidase, N-terminal beta-propeller domain. | 0.513 |
GLE_4533 | dapF | GLE_4533 | GLE_4534 | Hypothetical protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.983 |
GLE_4533 | xerC | GLE_4533 | GLE_4532 | Hypothetical protein. | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.879 |
GLE_4535 | GLE_4533 | GLE_4535 | GLE_4533 | Hypothetical protein. | Hypothetical protein. | 0.773 |
GLE_4535 | GLE_4536 | GLE_4535 | GLE_4536 | Hypothetical protein. | Hypothetical protein. | 0.475 |
GLE_4535 | dapF | GLE_4535 | GLE_4534 | Hypothetical protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.773 |
GLE_4535 | xerC | GLE_4535 | GLE_4532 | Hypothetical protein. | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.581 |
GLE_4536 | GLE_4533 | GLE_4536 | GLE_4533 | Hypothetical protein. | Hypothetical protein. | 0.532 |
GLE_4536 | GLE_4535 | GLE_4536 | GLE_4535 | Hypothetical protein. | Hypothetical protein. | 0.475 |
GLE_4536 | GLE_4537 | GLE_4536 | GLE_4537 | Hypothetical protein. | Prolyl oligopeptidase, N-terminal beta-propeller domain. | 0.463 |
GLE_4536 | GLE_4539 | GLE_4536 | GLE_4539 | Hypothetical protein. | Prolyl oligopeptidase/S9A/B/C peptidase domain protein. | 0.445 |
GLE_4536 | dapF | GLE_4536 | GLE_4534 | Hypothetical protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.532 |
GLE_4536 | xerC | GLE_4536 | GLE_4532 | Hypothetical protein. | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.441 |
GLE_4537 | GLE_4533 | GLE_4537 | GLE_4533 | Prolyl oligopeptidase, N-terminal beta-propeller domain. | Hypothetical protein. | 0.513 |
GLE_4537 | GLE_4536 | GLE_4537 | GLE_4536 | Prolyl oligopeptidase, N-terminal beta-propeller domain. | Hypothetical protein. | 0.463 |
GLE_4537 | GLE_4539 | GLE_4537 | GLE_4539 | Prolyl oligopeptidase, N-terminal beta-propeller domain. | Prolyl oligopeptidase/S9A/B/C peptidase domain protein. | 0.852 |
GLE_4537 | dapF | GLE_4537 | GLE_4534 | Prolyl oligopeptidase, N-terminal beta-propeller domain. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.513 |
GLE_4537 | xerC | GLE_4537 | GLE_4532 | Prolyl oligopeptidase, N-terminal beta-propeller domain. | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.443 |
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