Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fimSTwo-component system sensor protein. (356 aa)    
Predicted Functional Partners:
algR
Alginate biosynthesis regulatory protein.
 
 
 0.996
GLE_1539
Response regulator receiver/LytTr DNA-binding domain protein.
 
 
 0.949
GLE_3080
Transcriptional regulator, LytR/AlgR family.
 
 
 0.866
GLE_3017
Von Willebrand factor, type A.
   
  0.812
GLE_4778
Periplasmic iron-binding protein.
   
  0.812
GLE_0647
Response regulAtor containing a LytTR DNA-binding domain.
  
     0.768
GLE_0646
Histidine kinase.
 
  
 
0.717
GLE_1540
Histidine kinase.
 
  
 
0.717
GLE_4555
Phospholipase/carboxylesterase.
       0.717
GLE_3951
Response regulator receiver domain.
  
 
 0.626
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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