STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4586TonB-dependent siderophore receptor. (748 aa)    
Predicted Functional Partners:
GLE_4587
Propeptide, PepSY amd peptidase M4.
 
    0.877
GLE_2622
Isochorismatase.
   
  
 0.784
GLE_4588
Hypothetical protein.
       0.773
GLE_1248
Hydroxylase.
 
    0.633
GLE_4894
Amino acid adenylation domain protein.
  
  
 0.632
GLE_2560
Amino acid adenylation domain protein.
  
    0.618
GLE_1353
TonB-dependent receptor.
  
    0.578
GLE_3558
Aspartate kinase.
 
    0.553
GLE_2554
PepSY-associated TM helix domain protein.
 
    0.529
GLE_1051
PepSY-associated TM helix.
 
    0.523
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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