STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4617D-amino acid deaminase. (429 aa)    
Predicted Functional Partners:
hexR
Transcriptional regulator HexR.
 
   
 0.802
GLE_4619
2-dehydro-3-deoxygalactonokinase.
 
     0.747
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
 
  
  0.707
GLE_4616
Hypothetical protein.
 
     0.651
GLE_2141
D-isomer specific 2-hydroxyacid dehydrogenase.
     
 0.600
aceB
Malate synthase A.
     
  0.591
aceA
Isocitrate lyase.
     
  0.591
glcF
Glycolate oxidase, iron-sulfur subunit protein.
    
  0.591
GLE_2482
Oxidoreductase, FAD binding.
  
 
  0.527
GLE_4146
D-lactate dehydrogenase.
  
 
  0.527
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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