Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GLE_2535 | hexR | GLE_2535 | GLE_4618 | Transcriptional regulatory protein. | Transcriptional regulator HexR. | 0.465 |
GLE_2535 | pgi | GLE_2535 | GLE_3172 | Transcriptional regulatory protein. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.478 |
GLE_4616 | GLE_4617 | GLE_4616 | GLE_4617 | Hypothetical protein. | D-amino acid deaminase. | 0.653 |
GLE_4616 | hexR | GLE_4616 | GLE_4618 | Hypothetical protein. | Transcriptional regulator HexR. | 0.505 |
GLE_4617 | GLE_4616 | GLE_4617 | GLE_4616 | D-amino acid deaminase. | Hypothetical protein. | 0.653 |
GLE_4617 | GLE_4619 | GLE_4617 | GLE_4619 | D-amino acid deaminase. | 2-dehydro-3-deoxygalactonokinase. | 0.747 |
GLE_4617 | hexR | GLE_4617 | GLE_4618 | D-amino acid deaminase. | Transcriptional regulator HexR. | 0.775 |
GLE_4619 | GLE_4617 | GLE_4619 | GLE_4617 | 2-dehydro-3-deoxygalactonokinase. | D-amino acid deaminase. | 0.747 |
GLE_4619 | eda | GLE_4619 | GLE_5189 | 2-dehydro-3-deoxygalactonokinase. | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. | 0.588 |
GLE_4619 | hexR | GLE_4619 | GLE_4618 | 2-dehydro-3-deoxygalactonokinase. | Transcriptional regulator HexR. | 0.801 |
eda | GLE_4619 | GLE_5189 | GLE_4619 | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. | 2-dehydro-3-deoxygalactonokinase. | 0.588 |
eda | edd | GLE_5189 | GLE_5191 | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. | 0.999 |
eda | glk | GLE_5189 | GLE_2776 | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.959 |
eda | glk-2 | GLE_5189 | GLE_3662 | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.803 |
eda | glk-3 | GLE_5189 | GLE_5159 | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.931 |
eda | hexR | GLE_5189 | GLE_4618 | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. | Transcriptional regulator HexR. | 0.752 |
eda | pgi | GLE_5189 | GLE_3172 | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.926 |
edd | eda | GLE_5191 | GLE_5189 | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. | 0.999 |
edd | glk | GLE_5191 | GLE_2776 | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.871 |
edd | glk-2 | GLE_5191 | GLE_3662 | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.701 |
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