STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4623Tetratricopeptide repeat. (414 aa)    
Predicted Functional Partners:
fliR
Flagellar biosynthetic protein.
       0.706
fliQ
Flagellar biosynthetic protein.
       0.704
fliE
Flagellar hook-basal body complex protein.
 
 
   0.696
flhA
Flagellar biosynthesis protein.
       0.695
flhB
Flagellar biosynthetic protein.
       0.692
flgF
Flagellar basal-body rod protein.
       0.687
flgG
Flagellar basal-body rod protein.
       0.674
GLE_4630
Hypothetical protein.
       0.673
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
       0.656
GLE_4631
Hypothetical protein.
       0.655
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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