STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4649RNA polymerase sigma factor, sigma-70 family. (253 aa)    
Predicted Functional Partners:
flgC
Flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.987
fliF
Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.978
flgE
Flagellar hook protein.
 
  
 0.978
flgD
Flagellar hook capping protein.
 
  
 0.976
fliN
Flagellar motor switch protein.
 
  
 0.973
fliP
Flagellar biosynthetic protein; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
  
 0.973
flgG
Flagellar basal-body rod protein.
 
  
 0.971
fliQ
Flagellar biosynthetic protein.
 
  
 0.958
flgF
Flagellar basal-body rod protein.
 
  
 0.951
flgB
Flagellar basal-body rod protein.
  
 
 0.949
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.