GLE_4681 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLE_4681

Hypothetical protein. (406 aa)

Predicted Functional Partners:

GLE_4679

0.832

rtcA

0.824

GLE_4680

0.800

GLE_4350

0.740

GLE_0088

0.436

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_0088	GLE_4350	GLE_0088	GLE_4350	Hypothetical protein.	Transcriptional regulatory protein RtcR.	0.454
GLE_0088	GLE_4679	GLE_0088	GLE_4679	Hypothetical protein.	Band 7 protein family.	0.440
GLE_0088	GLE_4681	GLE_0088	GLE_4681	Hypothetical protein.	Hypothetical protein.	0.436
GLE_0088	rtcA	GLE_0088	GLE_4347	Hypothetical protein.	RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	0.735
GLE_4350	GLE_0088	GLE_4350	GLE_0088	Transcriptional regulatory protein RtcR.	Hypothetical protein.	0.454
GLE_4350	GLE_4681	GLE_4350	GLE_4681	Transcriptional regulatory protein RtcR.	Hypothetical protein.	0.740
GLE_4350	rtcA	GLE_4350	GLE_4347	Transcriptional regulatory protein RtcR.	RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	0.866
GLE_4679	GLE_0088	GLE_4679	GLE_0088	Band 7 protein family.	Hypothetical protein.	0.440
GLE_4679	GLE_4680	GLE_4679	GLE_4680	Band 7 protein family.	Hypothetical protein.	0.477
GLE_4679	GLE_4681	GLE_4679	GLE_4681	Band 7 protein family.	Hypothetical protein.	0.832
GLE_4679	rtcA	GLE_4679	GLE_4347	Band 7 protein family.	RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	0.494
GLE_4680	GLE_4679	GLE_4680	GLE_4679	Hypothetical protein.	Band 7 protein family.	0.477
GLE_4680	GLE_4681	GLE_4680	GLE_4681	Hypothetical protein.	Hypothetical protein.	0.800
GLE_4681	GLE_0088	GLE_4681	GLE_0088	Hypothetical protein.	Hypothetical protein.	0.436
GLE_4681	GLE_4350	GLE_4681	GLE_4350	Hypothetical protein.	Transcriptional regulatory protein RtcR.	0.740
GLE_4681	GLE_4679	GLE_4681	GLE_4679	Hypothetical protein.	Band 7 protein family.	0.832
GLE_4681	GLE_4680	GLE_4681	GLE_4680	Hypothetical protein.	Hypothetical protein.	0.800
GLE_4681	rtcA	GLE_4681	GLE_4347	Hypothetical protein.	RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	0.824
rtcA	GLE_0088	GLE_4347	GLE_0088	RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	Hypothetical protein.	0.735
rtcA	GLE_4350	GLE_4347	GLE_4350	RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	Transcriptional regulatory protein RtcR.	0.866