GLE_4778 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GLE_4778

Periplasmic iron-binding protein. (383 aa)

Predicted Functional Partners:

GLE_4779

0.994

GLE_4780

0.826

fimS

0.812

potG

0.704

GLE_5248

0.513

GLE_0374

0.502

ugpC

0.498

GLE_4781

0.458

maeB

0.436

GLE_0523

0.433

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_0374	GLE_4778	GLE_0374	GLE_4778	N-acylglucosamine 2-epimerase family protein.	Periplasmic iron-binding protein.	0.502
GLE_0523	GLE_4778	GLE_0523	GLE_4778	OmpA/MotB family protein.	Periplasmic iron-binding protein.	0.433
GLE_4778	GLE_0374	GLE_4778	GLE_0374	Periplasmic iron-binding protein.	N-acylglucosamine 2-epimerase family protein.	0.502
GLE_4778	GLE_0523	GLE_4778	GLE_0523	Periplasmic iron-binding protein.	OmpA/MotB family protein.	0.433
GLE_4778	GLE_4779	GLE_4778	GLE_4779	Periplasmic iron-binding protein.	Sensor histidine kinase.	0.994
GLE_4778	GLE_4780	GLE_4778	GLE_4780	Periplasmic iron-binding protein.	Transcriptional regulatory protein, C terminal - DNA-binding response regulator.	0.826
GLE_4778	GLE_4781	GLE_4778	GLE_4781	Periplasmic iron-binding protein.	Phosphate-selective porin O and P.	0.458
GLE_4778	GLE_5248	GLE_4778	GLE_5248	Periplasmic iron-binding protein.	Sensor histidine kinase.	0.513
GLE_4778	fimS	GLE_4778	GLE_4554	Periplasmic iron-binding protein.	Two-component system sensor protein.	0.812
GLE_4778	maeB	GLE_4778	GLE_4777	Periplasmic iron-binding protein.	NADP-dependent malic enzyme.	0.436
GLE_4778	potG	GLE_4778	GLE_2342	Periplasmic iron-binding protein.	Putrescine transport ATP-binding protein potG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.704
GLE_4778	ugpC	GLE_4778	GLE_2773	Periplasmic iron-binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.498
GLE_4779	GLE_4778	GLE_4779	GLE_4778	Sensor histidine kinase.	Periplasmic iron-binding protein.	0.994
GLE_4779	GLE_4780	GLE_4779	GLE_4780	Sensor histidine kinase.	Transcriptional regulatory protein, C terminal - DNA-binding response regulator.	0.995
GLE_4779	GLE_4781	GLE_4779	GLE_4781	Sensor histidine kinase.	Phosphate-selective porin O and P.	0.562
GLE_4779	GLE_5248	GLE_4779	GLE_5248	Sensor histidine kinase.	Sensor histidine kinase.	0.541
GLE_4779	maeB	GLE_4779	GLE_4777	Sensor histidine kinase.	NADP-dependent malic enzyme.	0.525
GLE_4780	GLE_4778	GLE_4780	GLE_4778	Transcriptional regulatory protein, C terminal - DNA-binding response regulator.	Periplasmic iron-binding protein.	0.826
GLE_4780	GLE_4779	GLE_4780	GLE_4779	Transcriptional regulatory protein, C terminal - DNA-binding response regulator.	Sensor histidine kinase.	0.995
GLE_4780	GLE_4781	GLE_4780	GLE_4781	Transcriptional regulatory protein, C terminal - DNA-binding response regulator.	Phosphate-selective porin O and P.	0.477