Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4829Peptidase, families S8 and S53. (882 aa)    
Predicted Functional Partners:
chiA1
Chitinase A.
   
 0.828
GLE_3649
endo-beta-N-acetylglucosaminidase H.
   
 0.828
GLE_4830
Hypothetical protein.
       0.773
GLE_4831
FAD dependent oxidoreductase.
       0.737
GLE_4832
Hypothetical protein.
       0.737
GLE_4833
Hypothetical protein.
       0.721
GLE_4029
Glycosyltransferase family 36.
    
 0.616
chiA2
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
 
 0.576
GLE_2273
Glycosyl hydrolase, family 2.
     
 0.531
ugd
Udp-glucose 6-dehydrogenase.
    
  0.490
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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