Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4861Hypothetical protein. (498 aa)    
Predicted Functional Partners:
GLE_4862
Hypothetical protein.
       0.699
GLE_4860
MATE efflux family protein.
   
   0.621
GLE_0800
O-Antigen Polymerase.
  
     0.573
pheA
Chorismate mutase/prephenate dehydratase/ACT domain.
    
  0.571
GLE_4423
TonB-dependent receptor domain protein.
  
     0.567
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.542
GLE_0328
TonB-dependent receptor.
  
     0.539
GLE_1292
Cell wall hydrolase.
  
     0.539
GLE_4994
Immunogenic 75 kDa protein PG4.
  
     0.531
GLE_3584
Oar protein.
  
     0.522
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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