STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_4890Sensor kinase RpeA. (455 aa)    
Predicted Functional Partners:
GLE_4889
DNA-binding response regulator.
  0.969
GLE_0677
Dihydrolipoyl dehydrogenase.
    
 0.918
GLE_1788
DNA-binding response regulator.
 
  0.864
pilH-2
Type IV pilus assembly protein.
  
  0.852
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
 
  0.851
GLE_0631
DNA-binding response regulator.
 
  0.846
pilH
Type IV pilus assembly protein.
  
  0.846
GLE_2972
Transcriptional regulatory protein.
 
  0.845
GLE_1628
DNA-binding response regulator.
 
  0.841
virG
Regulatory protein virG.
 
  0.837
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.