Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GLE_4994Immunogenic 75 kDa protein PG4. (301 aa)    
Predicted Functional Partners:
GLE_0227
Tetratricopeptide repeat domain protein.
  
     0.705
oprF
Outer membrane porin F precursor.
 
  0.700
GLE_2234
Gram-negative bacterial tonB protein.
  
 
   0.643
GLE_2132
Transglycosylase SLT domain/LysM domain.
  
     0.597
gltB
Glutamine amidotransferases class-II/glutamate synthase.
     
  0.563
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.560
GLE_4861
Hypothetical protein.
  
     0.531
GLE_3312
Phosphate-selective porin O and P.
  
     0.522
GLE_4952
Hypothetical protein.
  
     0.515
GLE_4789
GDSL-like Lipase/Acylhydrolase.
  
     0.458
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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