STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ntrBNitrogen regulation protein NtrB. (353 aa)    
Predicted Functional Partners:
ntrC
Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 0.997
glnB
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 0.982
glnB-2
Nitrogen regulatory protein P-II.
  
 0.980
GLE_0164
Sensory box histidine kinase.
   
 0.949
GLE_0632
Sensory box histidine kinase.
 
 
0.913
GLE_5286
Sigma-54 dependent transcriptional regulator.
 0.863
pilR
Type IV pilus expression regulatory protein.
 0.853
dctD
C4-dicarboxylate transport transcriptional regulatory protein DctD.
 0.836
amt
Ammonium transporter.
  
 
 0.826
GLE_3701
Sigma-54 dependent transcriptional regulator.
 0.821
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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