Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_5067F5/8 type C domain protein. (545 aa)    
Predicted Functional Partners:
GLE_5068
alpha-L-fucosidase.
 
  
 
0.867
GLE_2271
Beta-hexosaminidase.
   
 0.797
GLE_5161
Beta-hexosaminidase.
   
 0.768
GLE_4614
Oxidoreductase family, NAD-binding Rossmann fold.
  
     0.752
GLE_2273
Glycosyl hydrolase, family 2.
 
   
 0.684
GLE_0378
Alpha-1,2-mannosidase, putative.
 
   
 0.669
GLE_1872
Alpha-1,2-mannosidase.
 
   
 0.651
GLE_0190
Hypothetical protein.
  
     0.649
GLE_2436
Acetylesterase.
  
  
  0.638
GLE_0867
Hypothetical protein.
  
     0.619
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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