Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
orf5Hypothetical protein. (262 aa)    
Predicted Functional Partners:
GLE_5104
Hypothetical protein.
       0.773
sctN
ATPase FliI/YscN family.
       0.773
sctL
Type III secretion apparatus protein.
       0.773
GLE_5107
Hypothetical protein.
       0.615
sctJ
Type III secretion apparatus lipoprotein.
       0.615
GLE_1248
Hydroxylase.
      
 0.579
GLE_5102
Hypothetical protein.
       0.559
GLE_5109
Hypothetical protein.
       0.538
bioC
Biotin biosynthesis protein BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
      
 0.425
rocF
Arginase; Belongs to the arginase family.
      
 0.406
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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