Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sctDType III secretion apparatus protein. (478 aa)    
Predicted Functional Partners:
sctV
Type III secretion protein.
  
  
 0.843
sctJ
Type III secretion apparatus lipoprotein.
  
  
 0.813
sucA
Oxoglutarate dehydrogenase, E1 component.
    
 
 0.735
GLE_2691
Bacterial NAD-glutamate dehydrogenase family protein.
    
   0.671
GLE_0632
Sensory box histidine kinase.
  
 
 0.633
flhA
Flagellar biosynthesis protein.
  
  
 0.607
GLE_0164
Sensory box histidine kinase.
    
 0.586
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.584
GLE_2967
AP endonuclease, family 2; Belongs to the UPF0276 family.
   
    0.581
GLE_3321
UPF0276 protein; Belongs to the UPF0276 family.
   
    0.581
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.